SLPS Online Help Documentation

    Protein subcellular localization, as one of the prerequisite information regarding a novel protein, is required for ensuing functional investigation by experimentalists. Despite of intriguing technical advancements in the past decades, it still remains time-consuming and laborious to experimentally determine protein subcellular localization in a large scale manner. Thus, computational approaches could be preferred to globally predict protein location information and subsequently guide experimental studies.

    The methods of protein subcellular localization prediction provided in this web-site is based on the Nearest Neighbor Algorithm incooperated with functional domain composition approach. See more details in our paper(in submission).

  1. Usage

    1. The querying page

      2. Since it will take some time to finish the submitted tasks. The user can either input the task identification as indicated in the submission page or follow the link "task history" to get the list of all the tasks submitted from the user's IP address at work.

      Example:

    2. The submission page

      3. The input of a single protein sequence or protein sequence files is required in fasta format, for example,

      >sp|P31119|AAS_ECOLI AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]-- phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl- [acyl-carrier-protein] synthetase (E
      MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGILLGLFLPVRPVFAVYTS ISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVIFPEGRITTTGSLMKIYDG AGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQVAMPDAPRARD RRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTK TLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAIARRRMPAMMNYTAGVKGLTSAITA AEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQV KQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFG LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPYDFYR LRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGM DARLLSVPGIEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVR FDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFT TDNELTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE

    3. The waiting page

      4. Waiting page will be dispalyed when the submitted task is running on the server.

    4. The result page

      5. A two column table shows the classification result.

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